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Applications of Network Propagation for the Discovery of Candidate Genes in Human Disease

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자료유형학위논문
서명/저자사항Applications of Network Propagation for the Discovery of Candidate Genes in Human Disease.
개인저자Huang, Justin Kwang-Lay.
단체저자명University of California, San Diego. Bioinformatics and Systems Biology.
발행사항[S.l.]: University of California, San Diego., 2018.
발행사항Ann Arbor: ProQuest Dissertations & Theses, 2018.
형태사항138 p.
기본자료 저록Dissertation Abstracts International 79-12B(E).
Dissertation Abstract International
ISBN9780438168213
학위논문주기Thesis (Ph.D.)--University of California, San Diego, 2018.
일반주기 Source: Dissertation Abstracts International, Volume: 79-12(E), Section: B.
Includes supplementary digital materials.
Adviser: Trey Ideker.
요약The molecular system of the cell can be represented as a network with genes or proteins represented as the nodes and the various types of interactions between these proteins represented as the edges. This dissertation explores both the benefits
요약First, I present NSD1, a histone methyltransferase, that when mutated, confers improved survival for HPV-negative head and neck squamous cell cancer (HNSCC) patients. This project describes a standard approach for the discovery and validation of
요약In contrast to the NSD1 results, many cancer cohorts cannot be subtyped easily by the mutation status of a single, or small number of genes due to the heterogeneity of tumor genomes. Therefore, I developed a software package implementing an algo
요약In the final chapter of my thesis, I created a framework to evaluate molecular networks on their capacity to recover known disease-associated gene sets via network propagation. Given the number and diversity of molecular networks available, this
일반주제명Bioinformatics.
언어영어
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