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020 ▼a 9780438194779
035 ▼a (MiAaPQ)AAI10927907
040 ▼a MiAaPQ ▼c MiAaPQ ▼d 247004
0820 ▼a 574
1001 ▼a Sherlock, Madeline Elizabeth.
24510 ▼a Revealing Hidden Biology by Identifying Ligands for the ykkC Orphan Riboswitches.
260 ▼a [S.l.]: ▼b Yale University., ▼c 2018.
260 1 ▼a Ann Arbor: ▼b ProQuest Dissertations & Theses, ▼c 2018.
300 ▼a 299 p.
500 ▼a Source: Dissertation Abstracts International, Volume: 79-12(E), Section: B.
500 ▼a Adviser: Ronald R. Breaker.
5021 ▼a Thesis (Ph.D.)--Yale University, 2018.
520 ▼a Riboswitches are non-coding RNAs that bind a small molecule or ion ligand to regulate gene expression. The cognate ligands have been identified for dozens of riboswitch classes, but the ligand identities are unknown for many promising structured
520 ▼a My colleagues found that guanidine induces expression of a riboswitch- lacZ reporter gene fusion in a large screen of various growth conditions. They collected additional evidence implicating guanidine as the elusive ligand for ykkC riboswitches
520 ▼a I subsequently determined that representatives of two other RNA motifs, called mini-ykkC and ykkC-III, also bind guanidine in vitro. All three guanidine-binding RNA motifs have similar downstream gene associations, and therefore these three dist
520 ▼a While the majority of ykkC RNAs selectively bind guanidine, I found that the remaining 30% of ykkC RNAs do not bind guanidine and carry nucleotide changes in their binding pockets to allow recognition of a different ligand. I analyzed the consen
520 ▼a I discovered that the first variant class selectively binds guanosine tetraphosphate (ppGpp), a bacterial alarmone derived from the ribonucleotide GTP. The ppGpp riboswitch class primarily regulates transcription of genes involved in branched-ch
590 ▼a School code: 0265.
650 4 ▼a Biochemistry.
650 4 ▼a Microbiology.
650 4 ▼a Molecular biology.
690 ▼a 0487
690 ▼a 0410
690 ▼a 0307
71020 ▼a Yale University.
7730 ▼t Dissertation Abstracts International ▼g 79-12B(E).
773 ▼t Dissertation Abstract International
790 ▼a 0265
791 ▼a Ph.D.
792 ▼a 2018
793 ▼a English
85640 ▼u http://www.riss.kr/pdu/ddodLink.do?id=T15000857 ▼n KERIS ▼z 이 자료의 원문은 한국교육학술정보원에서 제공합니다.
980 ▼a 201812 ▼f 2019
990 ▼a ***1012033