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020 ▼a 9781687962904
035 ▼a (MiAaPQ)AAI22619112
040 ▼a MiAaPQ ▼c MiAaPQ ▼d 247004
0820 ▼a 542
1001 ▼a Lim, Nathan M.
24510 ▼a Molecular Simulations and Binding Free Energy Calculations for Drug Discovery.
260 ▼a [S.l.]: ▼b University of California, Irvine., ▼c 2019.
260 1 ▼a Ann Arbor: ▼b ProQuest Dissertations & Theses, ▼c 2019.
300 ▼a 236 p.
500 ▼a Source: Dissertations Abstracts International, Volume: 81-04, Section: B.
500 ▼a Advisor: Mobley, David L.
5021 ▼a Thesis (Ph.D.)--University of California, Irvine, 2019.
506 ▼a This item must not be sold to any third party vendors.
506 ▼a This item must not be added to any third party search indexes.
520 ▼a Early stage drug discovery would change dramatically if computational methods could accurately and quickly predict binding modes and affinities of compounds in advance of experiments. Simulation based approaches like classical molecular dynamics (MD) simulations have gained traction as a useful tool for early stage drug discovery, as MD provides a full atomistic and dynamic view of the biological system of interest. In principle, MD simulations can be a powerful tool for lead optimization as MD can provide knowledge of the ligand's binding mode, dynamics, and even binding affinity. In order to accurately compute binding affinities or predict ligand binding modes, simulations must run long enough to capture the relevant biological event or sufficiently sample all the physically relevant conformations. My research presents the development of new simulation approaches for accelerated sampling and demonstrates the use of non-equilibrium candidate Monte Carlo moves with MD simulations for predicting ligand binding modes to a pharmaceutically relevant target.
590 ▼a School code: 0030.
650 4 ▼a Computational chemistry.
690 ▼a 0219
71020 ▼a University of California, Irvine. ▼b Pharmacological Sciences - Ph.D..
7730 ▼t Dissertations Abstracts International ▼g 81-04B.
773 ▼t Dissertation Abstract International
790 ▼a 0030
791 ▼a Ph.D.
792 ▼a 2019
793 ▼a English
85640 ▼u http://www.riss.kr/pdu/ddodLink.do?id=T15493597 ▼n KERIS ▼z 이 자료의 원문은 한국교육학술정보원에서 제공합니다.
980 ▼a 202002 ▼f 2020
990 ▼a ***1008102
991 ▼a E-BOOK